需求

需要网页中的基因（Gene Symbol），一共371个。

 

 

使用pandas读取网页表格

 

read_html 返回的是列表（a list of DataFrame）

 

import pandas as pd

import bioquest as bq

 

url = "http://exocarta.org/browse_results?org_name=&cont_type=&tissue=Bladder%20cancer%20cells&gene_symbol="

df = pd.read_html(url, encoding='utf-8',header=0,index_col=0)[0]

bq.tl.select(df,columns=["Gene Name","Gene Symbol","Species"]).to_csv("gene.csv",index=False)

 

没有学过爬虫，好奇是read_html怎么做到的，怎么解析网页的。

 

This function searches for <table> elements and only for <tr> and <th> rows and <td> elements within each <tr> or <th> element in the table. <td> stands for “table data”. This function attempts to properly handle colspan and rowspan attributes. If the function has a <thead> argument, it is used to construct the header, otherwise the function attempts to find the header within the body (by putting rows with only <th> elements into the header).

 

网页中的表格html语法大概如下

 

tr: 定义表格的行 

th: 定义表格的表头 

td: 定义表格单元

<table class="..." id="...">

    <thead>

    <tr>

    <th>...</th>

    </tr>

    </thead>

    <tbody>

        <tr>

            <td>...</td>

        </tr>

        <tr>...</tr>

        <tr>...</tr>

        <tr>...</tr>

        <tr>...</tr>

        ...

        <tr>...</tr>

        <tr>...</tr>

        <tr>...</tr>

        <tr>...</tr>        

    </tbody>

</table>

所以read_html是依靠lxml等库根据HTML语法找到表格位置，并转换为DataFrame

 

Reference

https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.read_html.html

https://zhuanlan.zhihu.com/p/51968879

https://blog.csdn.net/qq_40478273/article/details/103980288