深度学习笔记25_LSTM实现糖尿病探索与预测

🍨 本文为🔗365天深度学习训练营中的学习记录博客
🍖 原作者：K同学啊 | 接辅导、项目定制

一、我的环境

1.语言环境：Python 3.9

2.编译器：Pycharm

3.深度学习环境：TensorFlow 2.10.0

二、GPU设置

若使用的是cpu则可忽略

import tensorflow as tf
gpus = tf.config.list_physical_devices("GPU")

if gpus:
    gpu0 = gpus[0] #如果有多个GPU，仅使用第0个GPU
    tf.config.experimental.set_memory_growth(gpu0, True) #设置GPU显存用量按需使用
    tf.config.set_visible_devices([gpu0],"GPU")

三、数据导入

import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import seaborn as sns
import torch
import torch.nn as nn
from sklearn.model_selection import train_test_split

import warnings

plt.rcParams['savefig.dpi'] = 100  # 图片像素
plt.rcParams['figure.dpi'] = 100  # 分辨率
plt.rcParams['font.sans-serif'] = ['SimHei']  # 用来正常显示中文标签
warnings.filterwarnings("ignore")
# 设置硬件设备，如果有GPU则使用，没有则使用cpu
DataFrame = pd.read_excel('data/dia.xlsx')

print(DataFrame.head())

         卡号  性别  年龄  高密度脂蛋白胆固醇  低密度脂蛋白胆固醇  ...   尿素氮     尿酸  肌酐  体重检查结果  是否糖尿病
0  18054421   0  38       1.25       2.99  ...  4.99  243.3  50       1      0
1  18054422   0  31       1.15       1.99  ...  4.72  391.0  47       1      0
2  18054423   0  27       1.29       2.21  ...  5.87  325.7  51       1      0
3  18054424   0  33       0.93       2.01  ...  2.40  203.2  40       2      0
4  18054425   0  36       1.17       2.83  ...  4.09  236.8  43       0      0

[5 rows x 16 columns]

四、数据检查

# 查看数据是否有缺失值
print('数据缺失值---------------------------------')
print(DataFrame.isnull().sum())

数据缺失值---------------------------------
卡号            0
性别            0
年龄            0
高密度脂蛋白胆固醇     0
低密度脂蛋白胆固醇     0
极低密度脂蛋白胆固醇    0
甘油三酯          0
总胆固醇          0
脉搏            0
舒张压           0
高血压史          0
尿素氮           0
尿酸            0
肌酐            0
体重检查结果        0
是否糖尿病         0
dtype: int64

# 查看数据是否有重复值
print('数据重复值---------------------------------')
print('数据集的重复值为:'f'{DataFrame.duplicated().sum()}')
#数据重复值---------------------------------
#数据集的重复值为:0

五、数据分布分析

feature_map = {
    '年龄': '年龄',
    '高密度脂蛋白胆固醇': '高密度脂蛋白胆固醇',
    '低密度脂蛋白胆固醇': '低密度脂蛋白胆固醇',
    '极低密度脂蛋白胆固醇': '极低密度脂蛋白胆固醇',
    '甘油三酯': '甘油三酯',
    '总胆固醇': '总胆固醇',
    '脉搏': '脉搏',
    '舒张压': '舒张压',
    '高血压史': '高血压史',
    '尿素氮': '尿素氮',
    '尿酸': '尿酸',
    '肌酐': '肌酐',
    '体重检查结果': '体重检查结果'
}
plt.rcParams.update({
    'axes.titlesize': 8,  # 图标题
    'axes.labelsize': 8,  # 轴标签
    'xtick.labelsize': 8,  # x轴刻度标签
    'ytick.labelsize': 8,  # y轴刻度标签
    'legend.fontsize': 8,  # 图例字体
    'figure.titlesize': 8  # 图形标题
})
plt.figure(figsize=(15, 10))
for i, (col, col_name) in enumerate(feature_map.items(), 1):
    plt.subplot(3, 5, i)
    sns.boxplot(x=DataFrame['是否糖尿病'], y=DataFrame[col])
    plt.title(f'{col_name}的箱线图', fontsize=8)
    plt.ylabel('数值', fontsize=8)
    # plt.grid(axis='y', linestyle='--', alpha=0.7)
plt.tight_layout()
plt.show()

六、LSTM模型

数据集构建

# '高密度脂蛋白胆固醇'字段与糖尿病负相关，故而在 X 中去掉该字段
X = DataFrame.drop(['卡号', '是否糖尿病', '高密度脂蛋白胆固醇'], axis=1)
y = DataFrame['是否糖尿病']
# sc_X = StandardScaler()
# X = sc_X.fit_transform(X)
X = torch.tensor(np.array(X), dtype=torch.float32)
y = torch.tensor(np.array(y), dtype=torch.int64)
train_X, test_X, train_y, test_y = train_test_split(X, y,
                                                    test_size=0.2,
                                                    random_state=1)
print(train_X.shape, train_y.shape)

输出
(torch.Size([804,13]),torch.Size([804]))

from torch.utils.data import TensorDataset, DataLoader

train_dl = DataLoader(TensorDataset(train_X, train_y),
                      batch_size=64,
                      shuffle=False)
test_dl = DataLoader(TensorDataset(test_X, test_y),
                     batch_size=64,
                     shuffle=False)

定义模型

class model_lstm(nn.Module):
    def __init__(self):
        super(model_lstm, self).__init__()

        self.lstm0 = nn.LSTM(input_size=13, hidden_size=200,
                             num_layers=1, batch_first=True)

        self.lstm1 = nn.LSTM(input_size=200, hidden_size=200,
                             num_layers=1, batch_first=True)
        self.fc0 = nn.Linear(200, 2)

    def forward(self, x):
        out, hidden1 = self.lstm0(x)

        out, _ = self.lstm1(out, hidden1)
        out = self.fc0(out)
        return out


model = model_lstm().to(device)
print(model)

输出
model_lstm(
  (lstm0): LSTM(13, 200, batch_first=True)
  (lstm1): LSTM(200, 200, batch_first=True)
  (fc0): Linear(in_features=200, out_features=2, bias=True)
)

七、训练模型

训练集

# 训练循环
def train(dataloader, model, loss_fn, optimizer):
    size = len(dataloader.dataset)  # 训练集的大小
    num_batches = len(dataloader)  # 批次数目, (size/batch_size，向上取整)
    train_loss, train_acc = 0, 0  # 初始化训练损失和正确率

    for X, y in dataloader:  # 获取图片及其标签
        X, y = X.to(device), y.to(device)

        # 计算预测误差
        pred = model(X)  # 网络输出
        loss = loss_fn(pred, y)  # 计算网络输出和真实值之间的差距，targets为真实值

        # 反向传播
        optimizer.zero_grad()  # grad属性归零
        loss.backward()  # 反向传播
        optimizer.step()  # 每一步自动更新

        # 记录acc与loss
        train_acc += (pred.argmax(1) == y).type(torch.float).sum().item()
        train_loss += loss.item()

    train_acc /= size
    train_loss /= num_batches
    return train_acc, train_loss

测试集

def test(dataloader, model, loss_fn):
    size = len(dataloader.dataset)  # 测试集的大小
    num_batches = len(dataloader)  # 批次数目, (size/batch_size，向上取
    test_loss, test_acc = 0, 0

    # 当不进行训练时，停止梯度更新，节省计算内存消耗
    with torch.no_grad():
        for imgs, target in dataloader:
            imgs, target = imgs.to(device), target.to(device)

            # 计算loss
            target_pred = model(imgs)
            loss = loss_fn(target_pred, target)

            test_loss += loss.item()
            test_acc += (target_pred.argmax(1) == target).type(torch.float).sum().item()
    test_acc /= size
    test_loss /= num_batches
    return test_acc, test_loss

模型训练

loss_fn = nn.CrossEntropyLoss()  # 创建损失函数
learn_rate = 1e-4  # 学习率
opt = torch.optim.Adam(model.parameters(), lr=learn_rate)
epochs = 30
train_loss = []
train_acc = []
test_loss = []
test_acc = []
for epoch in range(epochs):
    model.train()
    epoch_train_acc, epoch_train_loss = train(train_dl, model, loss_fn, opt)
    model.eval()
    epoch_test_acc, epoch_test_loss = test(test_dl, model, loss_fn)
    train_acc.append(epoch_train_acc)
    train_loss.append(epoch_train_loss)
    test_acc.append(epoch_test_acc)
    test_loss.append(epoch_test_loss)

    # 获取当前的学习率
    lr = opt.state_dict()['param_groups'][0]['lr']

    template = ('Epoch:{:2d}, Train_acc:{:.1f}%, Train_loss:{:.3f}, Test_acc:{:.1f}%, Test_loss:{:.3f},Lr:{:.2E}')
    print(
        template.format(epoch + 1, epoch_train_acc * 100, epoch_train_loss, epoch_test_acc * 100, epoch_test_loss, lr))

    print("=" * 20, 'Done', "=" * 20)

#结果
Epoch: 1, Train_acc:49.4%, Train_loss:0.699, Test_acc:57.4%, Test_loss:0.698,Lr:1.00E-04
==================== Done ====================
Epoch: 2, Train_acc:55.6%, Train_loss:0.688, Test_acc:54.5%, Test_loss:0.709,Lr:1.00E-04
==================== Done ====================
Epoch: 3, Train_acc:56.5%, Train_loss:0.683, Test_acc:53.0%, Test_loss:0.712,Lr:1.00E-04
==================== Done ====================
Epoch: 4, Train_acc:56.2%, Train_loss:0.680, Test_acc:53.0%, Test_loss:0.715,Lr:1.00E-04
==================== Done ====================
Epoch: 5, Train_acc:56.2%, Train_loss:0.678, Test_acc:53.0%, Test_loss:0.717,Lr:1.00E-04
==================== Done ====================
Epoch: 6, Train_acc:56.2%, Train_loss:0.675, Test_acc:53.0%, Test_loss:0.716,Lr:1.00E-04
==================== Done ====================
Epoch: 7, Train_acc:56.2%, Train_loss:0.673, Test_acc:53.0%, Test_loss:0.714,Lr:1.00E-04
==================== Done ====================
Epoch: 8, Train_acc:56.3%, Train_loss:0.670, Test_acc:53.0%, Test_loss:0.712,Lr:1.00E-04
==================== Done ====================
Epoch: 9, Train_acc:56.5%, Train_loss:0.666, Test_acc:52.5%, Test_loss:0.710,Lr:1.00E-04
==================== Done ====================
Epoch:10, Train_acc:56.8%, Train_loss:0.662, Test_acc:52.5%, Test_loss:0.707,Lr:1.00E-04
==================== Done ====================
Epoch:11, Train_acc:57.7%, Train_loss:0.656, Test_acc:52.0%, Test_loss:0.703,Lr:1.00E-04
==================== Done ====================
Epoch:12, Train_acc:58.6%, Train_loss:0.650, Test_acc:53.5%, Test_loss:0.699,Lr:1.00E-04
==================== Done ====================
Epoch:13, Train_acc:61.2%, Train_loss:0.643, Test_acc:55.9%, Test_loss:0.695,Lr:1.00E-04
==================== Done ====================
Epoch:14, Train_acc:63.4%, Train_loss:0.635, Test_acc:56.9%, Test_loss:0.689,Lr:1.00E-04
==================== Done ====================
Epoch:15, Train_acc:63.6%, Train_loss:0.626, Test_acc:58.9%, Test_loss:0.683,Lr:1.00E-04
==================== Done ====================
Epoch:16, Train_acc:65.3%, Train_loss:0.616, Test_acc:63.4%, Test_loss:0.676,Lr:1.00E-04
==================== Done ====================
Epoch:17, Train_acc:66.3%, Train_loss:0.605, Test_acc:62.9%, Test_loss:0.668,Lr:1.00E-04
==================== Done ====================
Epoch:18, Train_acc:68.8%, Train_loss:0.593, Test_acc:62.9%, Test_loss:0.662,Lr:1.00E-04
==================== Done ====================
Epoch:19, Train_acc:70.1%, Train_loss:0.583, Test_acc:62.9%, Test_loss:0.654,Lr:1.00E-04
==================== Done ====================
Epoch:20, Train_acc:70.5%, Train_loss:0.572, Test_acc:62.9%, Test_loss:0.649,Lr:1.00E-04
==================== Done ====================
Epoch:21, Train_acc:70.3%, Train_loss:0.562, Test_acc:61.9%, Test_loss:0.646,Lr:1.00E-04
==================== Done ====================
Epoch:22, Train_acc:71.3%, Train_loss:0.552, Test_acc:62.4%, Test_loss:0.644,Lr:1.00E-04
==================== Done ====================
Epoch:23, Train_acc:72.8%, Train_loss:0.543, Test_acc:61.9%, Test_loss:0.644,Lr:1.00E-04
==================== Done ====================
Epoch:24, Train_acc:73.3%, Train_loss:0.530, Test_acc:63.4%, Test_loss:0.640,Lr:1.00E-04
==================== Done ====================
Epoch:25, Train_acc:74.4%, Train_loss:0.522, Test_acc:63.9%, Test_loss:0.636,Lr:1.00E-04
==================== Done ====================
Epoch:26, Train_acc:74.8%, Train_loss:0.512, Test_acc:63.9%, Test_loss:0.635,Lr:1.00E-04
==================== Done ====================
Epoch:27, Train_acc:76.0%, Train_loss:0.501, Test_acc:64.4%, Test_loss:0.631,Lr:1.00E-04
==================== Done ====================
Epoch:28, Train_acc:76.9%, Train_loss:0.492, Test_acc:64.4%, Test_loss:0.629,Lr:1.00E-04
==================== Done ====================
Epoch:29, Train_acc:78.2%, Train_loss:0.484, Test_acc:64.9%, Test_loss:0.634,Lr:1.00E-04
==================== Done ====================
Epoch:30, Train_acc:78.1%, Train_loss:0.472, Test_acc:66.3%, Test_loss:0.634,Lr:1.00E-04
==================== Done ====================

八、总结

plt.rcParams['font.sans-serif'] = ['SimHei']  # 用来正常显示中文标签
plt.rcParams['axes.unicode_minus'] = False  # 用来正常显示负号
plt.rcParams['figure.dpi'] = 100  # 分辨率
epochs_range = range(epochs)
plt.figure(figsize=(12, 3))
plt.subplot(1, 2, 1)
plt.plot(epochs_range, train_acc, label='Training Accuracy')
plt.plot(epochs_range, test_acc, label='Test Accuracy')
plt.legend(loc='lower right')
plt.title('Training and Validation Accuracy')
plt.subplot(1, 2, 2)
plt.plot(epochs_range, train_loss, label='Training Loss')
plt.plot(epochs_range, test_loss, label='Test Loss')
plt.legend(loc='upper right')
plt.title('Training and Validation Loss')
plt.show()